Projects Offered

Helle Ulrich_actin  Christof Niehrs_Bioinfo  Helle Ulrich_Rloop  SvenDanck_rloop  Ari Waisman  Helle Ulrich  Christof Niehrs_Ageing  Christof Niehrs_Rloop  Jan Padeken_Rloop  Andreas Wachter_Rloop  Roopesh Anand_Rloop  Petra Beli  Brian Luke  Dorothee Dormann  Thomas Hofmann  Maria Felicia Basilicata  Katja Luck  Wolfram Ruf  Uwe Wolfrum  Johannes Mayer_SkinDC  Johannes Mayer_Exhaust  Johannes Mayer_APC  Sina Wittmann  Sandra Schick  Stamatis Papathanasiou 

Ageing, Embryos & Epigenetics

1 PhD project offered in the IPP winter call Molecular Mechanisms in Genome Stability & Gene Regulation

Scientific Background

Ageing is commonly believed to start in adulthood. However, there is increasing evidence that organismic ageing begins already during embryonic development. For example, analyses  Down syndrome shows pronounced acceleration of ageing markers already in fetal stages, similar to adult tissues. This indicates that mechanisms of ageing may be productively studied during embryogenesis.

PhD project: Ageing, Embryos & Epigenetics

You will study the role of progeria genes, which lead to premature ageing, in frog (Xenopus) embryos. We have recently shown that epignetic clock is applicable to frogs as it is in humans (Zoller et al., 2023). Using epignetic clock analysis, you will characterize cellular ageing and senescence in developing frog tissues using immunofluorescence microscopy. You will analyze epigenetic profiles in premature ageing embryos by Next Generation Sequencing, to understand the molecular network involved in these phenotypes. You will learn to analyze these Big Data by bioinformatic analysis. You will work in a team of developmental biologists and bioinformaticians. The successful candidate will have a strong background in Molecular or Developmental Biology to study ageing-related phenotype in embryos. You will apply techniques including embryo culture, microinjection, RNA in situ hybridisation, confocal microscopy, Next Generation Sequencing and bioinformatics data analysis

If you are interested in this project, please select Niehrs (Ageing) as your group preference in the IPP application platform.

Publication relevant to this project

Zoller JA, Parasyraki E, Lu AT, Haghani A, Niehrs C, Horvath S. (2024) DNA methylation clocks for clawed frogs reveal evolutionary conservation of epigenetic aging. Geroscience. 46:945-960. Link

 

Contact details

Prof. Christof Niehrs
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