Renz C, Albanèse V, Tröster V, Albert TK, Santt O, Jacobs SC, Khmelinskii A, Léon S and Ulrich HD (2020) Ubc13-Mms2 cooperates with a family of RING E3s in membrane protein sorting. J Cell Sci, doi: 10.1242/jcs.244566 Link


Caydasi AK, Khmelinskii A, Darieva Z, Kurtulmus B, Knop M and Pereira G (2019) SWR1 chromatin remodeling complex prevents mitotic slippage during spindle position checkpoint arrest. bioRxiv, doi: 10.1101/749440 Link

Dederer V, Khmelinskii A, Huhn AG, Okreglak V, Knop M and Lemberg MK (2019) Cooperation of mitochondrial and ER factors in quality control of tail-anchored proteins. eLife, 8:e45506 Link

Renz C, Tröster V, Albert TK, Santt O, Jacobs SC, Khmelinskii A and Ulrich HD (2019) The ubiquitin-conjugating enzyme Ubc13-Mms2 cooperates with a family of FYVE-type-RING ubiquitin protein ligases in K63-polyubiquitylation at internal membranes. bioRxiv, doi: 10.1101/575241 Link


Kats I, Khmelinskii A, Kschonsak M, Huber F, Knieß RA, Bartosik A and Knop M (2018) Mapping degradation signals and pathways in a eukaryotic N-terminome. Mol Cell, 70:488–501.e5 Link

Kowalski L, Bragoszewski P, Khmelinskii A, Glow E, Knop M and Chacinska A (2018) Determinants of the cytosolic turnover of mitochondrial intermembrane space proteins. BMC Biol, 16:66 Link

Meurer M, Duan Y, Sass E, Kats I, Herbst K, Buchmuller BC, Dederer V, Huber F, Kirrmaier D, Štefl M, Van Laer K, Dick TP, Lemberg MK, Khmelinskii A#, Levy ED# and Knop M# (2018) Genome-wide C-SWAT library for high-throughput yeast genome tagging. Nat Methods, 15:598–600 (#indicates joint correspondence) Link


Bunina D, Štefl M, Huber F, Khmelinskii A, Meurer M, Barry JD, Kats I, Kirrmaier D, Huber W and Knop M (2017) Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities. Nucleic Acids Res, 45:11144–11158 Link

Caydasi AK, Khmelinskii A, Duenas-Sanchez R, Kurtulmus B, Knop M and Pereira G (2017) Temporal and compartment-specific signals coordinate mitotic exit with spindle position. Nat Commun, 8:14129 Link


Huber F, Bunina D, Gupta I, Khmelinskii A, Meurer M, Theer P, Steinmetz LM and Knop M (2016) Protein abundance control by non-coding antisense transcription. Cell Rep, 15:2625–2636 Link

Khmelinskii A, Meurer M, Ho C-T, Besenbeck B, Fuller J, Lemberg MK, Bukau B, Mogk A and Knop M (2016) Incomplete proteasomal degradation of green fluorescent proteins in the context of tandem fluorescent protein timers. Mol Biol Cell, 27:360–370 Link

Yofe I#, Weill U, Meurer M, Chuartzman S#, Zalckvar E, Goldman O, Ben-Dor S, Schütze C, Wiedemann N, Knop M, Khmelinskii A# and Schuldiner M# (2016) One library to make them all: Streamlining the creation of yeast libraries via a SWAp-Tag strategy. Nat Methods, 13:371–378 (#indicates joint correspondence) Link


Khmelinskii A*, Blaszczak E*, Pantazopoulou M, Fischer B, Omnus DJ, Le Dez G, Brossard A, Gunnarsson A, Barry JD, Meurer M, Kirrmaier D, Boone C, Huber W, Rabut G, Ljungdahl PO and Knop M (2014) Protein quality control at the inner nuclear membrane. Nature, 516:410–413 (*indicates joint contribution) Link

Khmelinskii A and Knop M (2014) Analysis of protein dynamics with tandem fluorescent protein timers. Pages 195–210 in: Exocytosis and Endocytosis; Methods in Molecular Biology, vol. 1174 (ed. Ivanov A), Humana Press, New York Link

Kinkhabwala A, Khmelinskii A and Knop M (2014) Analytical model for macromolecular partitioning during yeast cell division. BMC Biophys, 7:10 Link

Meitinger F, Khmelinskii A, Morlot S, Kurtulmus B, Palani S, Andres-Pons A, Hub B, Knop M, Charvin G and Pereira G (2014) A memory system of negative polarity cues prevents replicative aging. Cell, 159:1056–1069 Link


Donà E, Barry JD, Valentin G, Quirin C, Khmelinskii A, Kunze A, Durdu S, Newton LR, Fernandez-Minan A, Huber W, Knop M and Gilmour D (2013) Directional tissue migration through a self-generated chemokine gradient. Nature, 503:285–289 Link


Khmelinskii A*, Keller PJ*, Bartosik A, Meurer M, Barry JD, Mardin BR, Kaufmann A, Trautmann S, Wachsmuth M, Pereira G, Huber W, Schiebel E and Knop M (2012) Tandem fluorescent protein timers for in vivo analysis of protein dynamics. Nat Biotechnol, 30:708–714 (*indicates joint contribution) Link


Khmelinskii A*, Meurer M*, Duishoev N, Delhomme N and Knop M (2011) Seamless gene tagging by endonuclease-driven homologous recombination. PLoS One, 6:e23794 (*indicates joint contribution) Link

Khmelinskii A, Meurer M, Knop M and Schiebel E (2011) Artificial tethering to nuclear pores promotes partitioning of extrachromosomal DNA during yeast asymmetric cell division. Curr Biol, 21:R17–R18 Link


Khmelinskii A, Keller PJ, Lorenz H, Schiebel E and Knop M (2010) Segregation of yeast nuclear pores. Nature, 466:E1 Link

Roostalu J#, Schiebel E and Khmelinskii A# (2010) Cell cycle control of spindle elongation. Cell Cycle, 9:1084–1090 (#indicates joint correspondence) Link


Khmelinskii A, Roostalu J, Roque H, Antony C and Schiebel E (2009) Phosphorylation-dependent protein interactions at the spindle midzone mediate cell cycle regulation of spindle elongation. Dev Cell, 17:244–256 Link

Khmelinskii A and Schiebel E (2009) Chromosome segregation: Monopolin goes spindle. Curr Biol, 19:R482–R484 Link


Khmelinskii A and Schiebel E (2008) Assembling the spindle midzone in the right place at the right time. Cell Cycle, 7:283–286 Link


Khmelinskii A*, Lawrence C*, Roostalu J and Schiebel E (2007) Cdc14-regulated midzone assembly controls anaphase B. J Cell Biol, 177:981–993 (*indicates joint contribution) Link