Kats I, Khmelinskii A, Kschonsak M, Huber F, Knieß RA, Bartosik A and Knop M. (2018). Mapping degradation signals and pathways in a eukaryotic N-terminome. Mol Cell, 70: 488–501.e5. Link

Kowalski L, Bragoszewski P, Khmelinskii A, Glow E, Knop M and Chacinska A. (2018). Determinants of the cytosolic turnover of mitochondrial intermembrane space proteins. BMC Biol, 16: 66. Link

Meurer M, Duan Y, Sass E, Kats I, Herbst K, Buchmuller BC, Dederer V, Huber F, Kirrmaier D, Štefl M, Van Laer K, Dick TP, Lemberg MK, Khmelinskii A#, Levy ED# and Knop M#. (2018). Genome-wide C-SWAT library for high-throughput yeast genome tagging. Nat Methods, 15: 598–600. (# indicates joint correspondence) Link


Bunina D, Štefl M, Huber F, Khmelinskii A, Meurer M, Barry JD, Kats I, Kirrmaier D, Huber W and Knop M. (2017). Upregulation of SPS100 gene expression by an antisense RNA via a switch of mRNA isoforms with different stabilities. Nucleic Acids Res, 45: 11144–11158. Link

Caydasi AK, Khmelinskii A, Duenas-Sanchez R, Kurtulmus B, Knop M and Pereira G. (2017). Temporal and compartment-specific signals coordinate mitotic exit with spindle position. Nat Commun, 8: 14129. Link


Huber F, Bunina D, Gupta I, Khmelinskii A, Meurer M, Theer P, Steinmetz LM and Knop M. (2016). Protein abundance control by non-coding antisense transcription. Cell Rep, 15: 2625–2636. Link

Khmelinskii A, Meurer M, Ho C-T, Besenbeck B, Fuller J, Lemberg MK, Bukau B, Mogk A and Knop M. (2016). Incomplete proteasomal degradation of green fluorescent proteins in the context of tandem fluorescent protein timers. Mol Biol Cell, 27: 360–370. Link

Yofe I#, Weill U, Meurer M, Chuartzman S#, Zalckvar E, Goldman O, Ben-Dor S, Schütze C, Wiedemann N, Knop M, Khmelinskii A# and Schuldiner M#. (2016). One library to make them all: Streamlining the creation of yeast libraries via a SWAp-Tag strategy. Nat Methods, 13: 371–378. (#indicates joint correspondence) Link


Khmelinskii A and Knop M. (2014). Analysis of protein dynamics with tandem fluorescent protein timers. pages 195-210, In: Exocytosis and Endocytosis. Methods in Molecular Biology (Methods and Protocols), vol 1174. Ivanov A (ed). Humana Press, New York, NY Link

Khmelinskii A*, Blaszczak E*, Pantazopoulou M, Fischer B, Omnus DJ, Le Dez G, Brossard A, Gunnarsson A, Barry JD, Meurer M, Kirrmaier D, Boone C, Huber W, Rabut G, Ljungdahl PO and Knop M. (2014). Protein quality control at the inner nuclear membrane. Nature, 516: 410–413. (*indicates joint contribution) Link

Kinkhabwala A, Khmelinskii A and Knop M. (2014). Analytical model for macromolecular partitioning during yeast cell division. BMC Biophys, 7: 10. Link

Meitinger F, Khmelinskii A, Morlot S, Kurtulmus B, Palani S, Andres-Pons A, Hub B, Knop M, Charvin G and Pereira G. (2014). A memory system of negative polarity cues prevents replicative aging. Cell, 159: 1056–1069. Link


Donà E, Barry JD, Valentin G, Quirin C, Khmelinskii A, Kunze A, Durdu S, Newton LR, Fernandez-Minan A, Huber W, Knop M and Gilmour D. (2013). Directional tissue migration through a self-generated chemokine gradient. Nature, 503: 285–289. Link


Khmelinskii A*, Keller PJ*, Bartosik A, Meurer M, Barry JD, Mardin BR, Kaufmann A, Trautmann S, Wachsmuth M, Pereira G, Huber W, Schiebel E and Knop M. (2012). Tandem fluorescent protein timers for in vivo analysis of protein dynamics. Nat Biotechnol, 30: 708–714. (*indicates joint contribution) Link


Khmelinskii A, Meurer M, Knop M and Schiebel E. (2011). Artificial tethering to nuclear pores promotes partitioning of extrachromosomal DNA during yeast asymmetric cell division. Curr Biol, 21: R17–R18. Link

Khmelinskii A*, Meurer M*, Duishoev N, Delhomme N and Knop M. (2011). Seamless gene tagging by endonuclease-driven homologous recombination. PLoS One, 6: e23794.  (*indicates joint contribution) Link


Khmelinskii A, Keller PJ, Lorenz H, Schiebel E and Knop M. (2010). Segregation of yeast nuclear pores. Nature, 466: E1. Link

Roostalu J#, Schiebel E and Khmelinskii A#. (2010). Cell cycle control of spindle elongation. Cell Cycle, 9: 1084–1090.  (#indicates joint correspondence) Link


Khmelinskii A and Schiebel E. (2009). Chromosome segregation: Monopolin goes spindle. Curr Biol, 19: R482–R484. Link

Khmelinskii A, Roostalu J, Roque H, Antony C and Schiebel E. (2009). Phosphorylation-dependent protein interactions at the spindle midzone mediate cell cycle regulation of spindle elongation. Dev Cell, 17: 244–256. Link


Khmelinskii A and Schiebel E. (2008). Assembling the spindle midzone in the right place at the right time. Cell Cycle, 7: 283–286. Link


Khmelinskii A*, Lawrence C*, Roostalu J and Schiebel E. (2007). Cdc14-regulated midzone assembly controls anaphase B. J Cell Biol, 177: 981–993. (*indicates joint contribution) Link