Computational biology & data mining

Miguel Andrade

Positions held

  • Since 2014: Adjunct Director, Institute of Molecular Biology (IMB), Mainz; Professor, Faculty of Biology, University of Mainz
  • 2007-2014: Group Leader, Max Delbrück Center for Molecular Medicine, Berlin
  • 2003-2007: Assistant Professor, University of Ottawa

Education

  • 1994: PhD in Biochemistry, Universidad Complutense de Madrid

Most relevant publications by Miguel Andrade

Amrani KE, Stachelscheid H, Lekschas F, Kurtz A and Andrade-Navarro MA (2015). MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data. BMC Genomics, 16, 645

Voss F, Ullrich F, Münch J, Lazarow K, Lutter D, Mah N, Andrade-Navarro MA, von Kries JP, Stauber T and Jentsch TJ (2014). Identification of LRRC8 heteromers as essential component of the volume-regulated anion channel VRAC. Science, 344, 634-638

Gebhardt ML, Reuter S, Mrowka R and Andrade-Navarro MA (2014). Similarity in targets with REST points to neural and glioblastoma related miRNAs. Nucleic Acids Res, 42, 5436-5446

Fournier D, Palidwor GA, Shcherbinin S, Szengel A, Schaefer MH, Perez-Iratxeta C and Andrade-Navarro MA (2013). Functional and genomic analyses of alpha-solenoid proteins. PLoS One, 8, e79894

Mer AS and Andrade-Navarro MA (2013). A novel approach for protein subcellular location prediction using amino acid exposure. BMC Bioinformatics, 14, 342

Petrakis S, Schaefer MH, Wanker EE and Andrade-Navarro MA (2013). Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled coil partners. Bioessays, 35, 503-507

Schaefer MH, Lopes TJS, Mah N, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Amie Eisfeld C, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H and Andrade-Navarro MA (2013). Adding protein context to the human protein-protein interaction network to reveal meaningful interactions. PLOS Comp Biol, 9:e1002860

Zhang J, Wagh P, Guay D, Sanchez-Pulido L, Padhi BK, Korzh V, Andrade-Navarro MA and Akimenko M (2010). Loss of fish actinotrichia proteins and the fin-to-limb transition. Nature, 466, 234-237

Bröske A, Vockentanz L, Kharazi S, Huska MR, Mancini E, Scheller M, Enns A, Prinz M, Jaenisch R, Nerlov C, Leutz A, Andrade-Navarro MA, Jacobsen SEW and Rosenbauer F (2009). DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction. Nature Genet, 41, 207-215

Neuspiel M, Schauss AC, Braschi E, Zunino R, Rippstein P, Rachubinski RA, Andrade-Navarro MA and McBride HM (2008). Cargo-selected transport from the mitochondria to peroxisomes is mediated by vesicular carriers. Curr Biol, 18, 102-108

Sanchez-Pulido L and Andrade-Navarro MA (2007). The FTO (fat mass and obesity associated) gene codes for a novel member of the non-heme dioxygenase superfamily. BMC Biochemistry, 8, 23

Hailesellasse Sene K, Porter CJ, Palidwor G, Perez-Iratxeta C, Muro EM, Campbell PA, Rudnicki MA and Andrade-Navarro MA (2007). Gene function in early mouse embryonic stem cell differentiation. BMC Genomics, 8, 85

Perez-Iratxeta C, Bork P and Andrade MA (2002). Association of genes to genetically inherited diseases using data mining. Nature Genet, 31, 316-319

Perez-Iratxeta C and Andrade MA (2002). Worldwide scientific publishing activity. Science, 297, 519

Andrade MA, Petosa C, O'Donoghue SI, Müller CW and Bork CP (2001). Comparison of ARM and HEAT proteins repeats.  J Mol Biol, 309, 1-18

Andrade MA, Perez-Iratxeta C and Ponting CP (2001). Protein repeats: structures, functions and evolution. J Struct Biol, 84, 445-451

Casari G, Andrade MA, Bork P, Boyle J, Daruvar A, Ouzounis C, Schneider R, Tamames J, Valencia A and Sander C (1995). Challenging times for bioinformatics. Nature, 376, 647-648

Andrade MA and Bork P (1995). HEAT repeats in the Huntington's disease protein. Nature Genet, 11, 115-116

 

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