Gezelius H, Moreno-Juan V, Mezzera C, Thakurela S, Rodríguez-Malmierca M, Pistolic J, Benes V, Tiwari VK and López-Bendito G. Genetic labelling of nuclei-specific thalamocortical neurons reveals putative sensory-modality specific genes. Cerebral Cortex, 20 Sep 2016 [Epub ahead of print]

Pataskar A*, Jung J*, Smialowski P, Noack F, Calegari F, Straub T and Tiwari VK (2016). NeuroD1  reprograms chromatin and transcription factor landscapes to induce the neuronal program. EMBO J, 35, 24-45 (*indicates joint contribution)

Pataskar A*, Jung J* and Tiwari VK (2016). Deciphering the epigenetic code of embryonic neurogenesis. Reviews in Molecular Cell Biology and Molecular Medicine, 2, 168-207 (*indicates joint contribution)

Pataskar A and Tiwari VK (2016). Computational challenges in modeling gene regulatory events. Transcription, 8, 1-8

Sahu SK*, Fritz A*, Tiwari N*, Kovacs Z, Pouya A, Wüllner V, Bora P, Schacht T, Baumgart J, Peron S, Berninger B, Tiwari VK# and Methner A# (2016). TOX3 regulates neural progenitor identity. Biochim Biophys Acta, 1859, 833-840 (*indicates joint contribution, #indicates joint correspondence)

Schick S*, Becker K*, Thakurala S, Fournier D, Hampel MH, Legewie S# and Tiwari VK# (2016). Identifying novel circadian transcriptional regulators. Mol Cell Biol, 36, 545-558 (*indicates joint contribution, #indicates joint correspondence)

Stanzel S, Stubbusch J, Pataskar A, Howard MJ, Deller T, Ernsberger U, Tiwari VK, Rohrer H and Tsarovina K (2016). Distinct roles of Hand2 in developing and adult autonomic neurons. Dev Neurobiol, 76, 1111-1124

Thakurela S*, Garding A*, Jung RB, Müller C, Goebbels S, White R, Werner HB# and Tiwari VK# (2016). The transcriptome of mouse central nervous system myelin. Sci Rep, 6, 25828 (*indicates joint contribution, #indicates joint correspondence)

Thakurela S*, Tiwari N*, Schick S, Garding A, Ivanek R, Berninger B and Tiwari VK (2016). Mapping gene regulatory circuitry of Pax6 during neurogenesis. Cell Discov, 2, 15045 (*indicates joint contribution)

Wagner M, Jung J, Koslowski M, Türeci O, Tiwari VK# and Sahin U# (2016). Chromatin immunoprecipitation assay to identify genomic binding sites of regulatory factors. Methods Mol Biol, 1366, 53-65 (#indicates joint correspondence)

Prakash K, Fournier D, Redl S, Best G, Borsos M, Tiwari VK, Ketting RF, Tachibana-Konwalski K, Cremer C and Birk U (2015). Super-resolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes. Proc Natl Acad Sci U S A, 112, 14635-14640

Sahu SK, Garding A, Tiwari N, Thakurela S, Toedling J, Gebhard S, Ortega F, Schmarowski N, Berninger B, Nitsch R, Schmidt M and Tiwari VK (2015). JNK-dependent gene regulatory circuitry governs mesenchymal fate. EMBO J, 34, 2162-2181

Schick S*, Becker K*, Thakurala S, Fournier D, Hampel MH, Legewie S# and Tiwari VK# (2015). Identifying novel circadian transcriptional regulators.Mol Cell Biol, 36, 545-558 (*indicates joint contribution, #indicates joint correspondence)

Schick S*, Fournier D*, Thakurela S, Sahu SK, Garding A and Tiwari VK (2015). Dynamics of chromatin accessibility and epigenetic state in response to UV damage. J Cell Sci, 128, 4380-4394 (*indicates joint contribution)

Thakurela S*, Sahu SK*, Garding A and Tiwari VK (2015). Dynamics and function of distal regulatory elements during neurogenesis and neuroplasticity. Genome Res, 25, 1309-24 (*indicates joint contribution)

von der Lippen C, Sahu SK, Seifermann M, Tiwari VK and Epe B (2015). The repair of oxidized purines in the DNA of human lymphocytes requires an activation involving NF-YA-mediated upregulation of OGG1. DNA Repair (Amst), 25, 1-8

Garding A, Bhattacharya N, Claus R, Ruppel M, Tschuch C, Filarsky K, Idler I, Zucknick M, Caudron-Herger M, Oakes C, Fleig V, Keklikoglou I, Allegra D, Serra L, Thakurela S, Tiwari V, Weichenhan D, Benner A, Radlwimmer B, Zentgraf H, Wiemann S, Rippe K, Plass C, Döhner H, Lichter P, Stilgenbauer S and Mertens D (2013). Epigenetic upregulation of lncRNAs at 13q14.3 in leukemia is linked to the in cis downregulation of a gene cluster that targets NF-kB. PLoS Genet, 9, e1003373

Thakurela S*, Garding A*, Jung J, Schübeler D, Burger L, Tiwari VK (2013). Gene regulation and priming by topoisomerase IIα in embryonic stem cells. Nat Commun, 4, 2478 (*indicates joint contribution)

Tiwari N, Tiwari VK, Waldmeier L, Balwierz P, Arnold P, Pachkov M, Meyer-Schaller N, Schübeler D, van Nimwegen E and Christofori G (2013). Sox4 Is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming. Cancer Cell, 23, 768-783

Tiwari VK#, Burger L, Nikoletopoulou V, Deogracias R, Thakurela S, Wirbelauer C, Kaut J, Terranova R, Hoerner L, Mielke C, Boege F, Murr R, Peters AH, Barde YA and Schübeler D# (2012). Target genes of Topoisomerase IIβ regulate neuronal survival and are defined by their chromatin state. Proc Natl Acad Sci U S A, 190, E934-E943 (#indicates joint correspondence)

Bell O, Tiwari VK, Thomä NH and Schübeler D (2011). Dynamics and determinants of DNA accessibility. Nat Rev Genet, 12, 554-564

Lienert F, Mohn F, Tiwari VK, Baubec T, Roloff TC, Gaidatzis D, Stadler MB and Schubeler D (2011). Genomic prevalence of heterochromatic H3K9me2 and transcription do not discriminate pluripotent from terminally differentiated cells. PLoS Genet, 7, e1002090

Stadler MB, Murr R, Burger L, Ivanek R, Lienert F, Schöler A, Wirbelauer C, Oakeley EJ, Gaidatzis D, Tiwari VK and Schübeler D (2011). Transcription factor binding dynamically shapes the mouse methylome at distal regulatory regions. Nature, 480, 490-495

Tiwari VK, Stadler M, Wirbelauer C, Paro R, Beisel C and Schübeler D (2011). A chromatin-modifying function of JNK during stem cell differentiation. Nature Genet, 44, 94-100

Licchesi JD, Van Neste L, Tiwari VK, Cope L, Lin X, Baylin SB and Herman JG (2010). Transcriptional regulation of Wnt inhibitory factor-1 by Miz-1/c-Myc. Oncogene, 29, 5923-5934

Tiwari VK and Baylin SB (2010). Mapping networks of protein-mediated physical interactions between chromatin elements. Curr Protoc Mol Biol, Chapter 21, Unit 21 16 1-13

Sandhu KS, Shi C, Sjölinder M, Zhao Z, Gondor A, Liu L, Tiwari VK, Guibert S, Emilsson L, Imreh MP and Ohlsson R (2009). Nonallelic transvection of multiple imprinted loci is organized by the H19 imprinting control region during germline development. Genes Dev, 23, 2598-2603

Tiwari VK and Baylin SB (2009). Combined 3C-ChIP-cloning (6C) assay: a tool to unravel protein-mediated genome architecture. Cold Spring Harb Protoc, pdb prot5168 

Tiwari VK and Baylin SB (2009). Breaching the boundaries that safeguard against repression. Mol Cell, 34, 395-397

Nemeth A, Guibert S, Tiwari VK, Ohlsson R and Langst G (2008). Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes. EMBO J, 27, 1255-1265

Tiwari VK, Cope L, McGarvey KM, Ohm JE and Baylin SB (2008). A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations. Genome Res, 18, 1171-1179

Tiwari VK, McGarvey KM, Licchesi JD, Ohm JE, Herman JG, Schubeler D and Baylin SB (2008). PcG proteins, DNA methylation, and gene repression by chromatin looping. PLoS Biol, 6, 2911-2927

Tiwari VK*,  Kurukuti S*, Tavoosidana G *, Pugacheva E, Murrell A, Zhao Z, Lobanenkov V, Reik W and Ohlsson R (2006). CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2. Proc Natl Acad Sci U S A, 103, 10684-10689 (* indicates joint contribution)

Zhao Z, Tavoosidana G, Sjolinder M, Gondor A, Mariano P, Wang S, Kanduri C, Lezcano M, Singh Sandhu K, Singh U, Pant V, Tiwari VK, Kurukuti S and Ohlsson R (2006). Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. Nat Genet, 38, 1341-1347

Burke LJ*, Zhang R*, Bartkuhn M*, Tiwari VK, Tavoosidana G, KurukutiS, Weth C, Leers J, Galjart N, Ohlsson R and Renkawitz R (2005). CTCF binding and higher order structure of Igf2-H19 locus is conserved through mitosis. EMBO J, 24, 3291-3300 (*indicates joint contribution)

Pugacheva EM, Tiwari VK, Abdullaev Z, Vostrov AA, Flanagan PT, Quitschke WW, Loukinov DI, Ohlsson R and Lobanenkov VV (2005). Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation. Hum Mol Genet,14, 953-65                       

Tiwari VK*, Thakur N*, Thomassin H, Pandey RR, Kanduri M, Gondor A, Grange T, Ohlsson R and Kanduri C (2004). An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region. Mol Cell Biol, 24, 7855-62 (*indicates joint contribution)