Kaaij LJ, Mokry M, Zhou M, Musheev M, Geeven G, Melquiond AS, de Jesus Domingues AM, de Laat W, Niehrs C, Smith AD, Ketting RF (2016). Enhancers reside in a unique epigenetic environment during early zebrafish development. Genome Biol, 17, 146

San B, Chrispijn ND, Wittkopp N, van Heeringen SJ, Lagendijk AK, Aben M, Bakkers J, Ketting RF, Kamminga LM (2016). Normal formation of a vertebrate body plan and loss of tissue maintenance in the absence of ezh2. Sci Rep, 6, 24658

de Albuquerque BFM, Placentino M and Ketting RF (2015). Maternal piRNAs are essential for germline development following de-novo establishment of endo-siRNAs in Caenorhabditis elegans. Dev Cell, 34, 448-456

Gebert D, Ketting RF, Zischler H and Rosenkranz D (2015). piRNAs from pig testis provide evidence for a conserved role of the piwi pathway in post-transcriptional gene regulation in mammals. PLoS One 10, e0124860

Prakash K, Fournier D, Redl S, Best G, Borsos M, Tiwari VK, Ketting RF, Tachibana-Konwalski K, Cremer C and Birk U (2015). Super-resolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes. Proc Natl Acad Sci U S A, 112, 14635-14640

Roovers EF, Rosenkranz D, Mahdipour M, Han CT, He N, Chuva de Sousa Lopes SM, van de Westerlaken LAJ, Zischler H, Butter F, Roelen BAJ and Ketting RF (2015). Piwi Proteins and piRNAs in mammalian oocytes and early embryos. Cell Rep, 10, 2069-2082

Rosenkranz D, Han CT, Roovers EF, Zischler H and Ketting RF (2015). Piwi proteins and piRNAs in mammalian oocytes and early embryos: from sample to sequence. Genomics Data, 5, 309-313

Rosenkranz D, Rudloff S, Bastuck K, Ketting RF and Zischler H (2015). Tupaia small RNAs provide insights into function and evolution of RNAi-based transposon defense in mammals. RNA, 21, 911-922

de Albuquerque BFM, Luteijn MJ, Cordeiro Rodrigues RJ, van Bergeijk P, Waaijers S, Kaaij LJT, Klein H, Boxem M and Ketting RF (2014). PID-1 is a novel factor that operates during 21U-RNA biogenesis in Caenorhabditis elegans. Genes Dev, 28, 683-688

Huang HY, Ketting RF (2014). Isolation of Zebrafish Gonads for RNA Isolation. PIWI-Interacting RNAs, Methods Mol Biol, 1093, 183-194

Kellner S, Neumann J, Rosenkranz D, Lebedeva S, Ketting RF, Zischler H, Schneider D, Helm M (2014). Profiling of RNA modifications by multiplexed stable isotope labeling. Chem Commun (Camb), 50, 3516-3518

Phillips CM, Montgomery BE, Breen PC, Roovers EF, Rim YS, Ohsumi TK, Newman MA, van Wolfswinkel JC, Ketting RF, Ruvkun G, Montgomery TA (2014). MUT-14 and SMUT-1 DEAD Box RNA Helicases have overlapping roles in germline RNAi and endogenous siRNA formation. Curr Biol, 24, 839-844

Swarts DC, Makarova K, Wang Y, Nakanishi K, Ketting RF, Koonin EV, Patel DJ and van der Oost J (2014). The evolutionary journey of Argonaute proteins. Nat Struct Mol Biol, 21, 743-753

Basten SG, Davis EE, Gillis AJ, van Rooijen E, Stoop H, Babala N, Logister I, Heath ZG, Jonges TN, Katsanis N, Voest EE, van Eeden FJ, Medema RH, Ketting RF, Schulte-Merker S, Looijenga LH and Giles RH (2013). Mutations in LRRC50 predispose zebrafish and humans to seminomas. PLoS Genet, 9, e1003384

de Albuquerque BF, Ketting RF (2013). Is this mine? small RNAs help to decide. Dev Cell, 27, 599-601

Kaaij LJ, van de Wetering M, Fang F, Decato B, Molaro A, van de Werken HJ, van Es JH, Schuijers J, de Wit E, de Laat W, Hannon GJ, Clevers HC, Smith AD, Ketting RF (2013). DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus. Genome Biol, 14, R50

Kaaij LJ, Hoogstrate SW, Berezikov E and Ketting RF (2013). piRNA dynamics in divergent zebrafish strains reveal long-lasting maternal influence on zygotic piRNA profiles. RNA, 19, 345-356

Luteijn MJ and Ketting RF (2013). PIWI-interacting RNAs: from generation to transgenerational epigenetics. Nat Rev Genet, 14, 523-34

Kamminga LM, van Wolfswinkel JC, Luteijn MJ, Kaaij LJ, Bagijn MP, Sapetschnig A, Miska EA, Berezikov E and Ketting RF (2012). Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhibditis elegans. PLoS Genet, 8, e1002702

Luteijn MJ, van Bergeijk P, Kaaij LJ, Almeida MV, Roovers EF, Berezikov E and Ketting RF (2012). Extremely stable Piwi-induced gene silencing in Caenorhabditis elegans. EMBO J, 31, 3422-3430

Huang H-Y, Houwing S, Kaaij LJT, Meppelink A, Redl S, Gauci S, Vos H, Draper BW, Moens CB, Burgering BM, Ladurner P, Krijgsveld J, Berezikov E and Ketting RF (2011). Tdrd1 acts as a molecular scaffold for Piwi proteins and piRNA targets in zebrafish. EMBO J, 30, 3298-3308

Kamminga LM and Ketting RF (2011). RNAi genes pave their own way. Genes Dev, 25, 529-533

Ketting RF (2011). The Many Faces of RNAi. Dev Cell, 20, 148-161

Correa RL, Steiner FA, Berezikov E and Ketting RF (2010). MicroRNA-Directed siRNA Biogenesis in Caenorhabditis elegans. PLoS Genet, 6, e1000903

Kaaij LJT and Ketting RF (2010). Dcr1 Tracked Down. Dev Cell, 18, 6-7

Kamminga LM, Luteijn MJ, den Broeder MJ, Redl S, Kaaij LJT, Roovers EF, Ladurner P, Berezikov E and Ketting RF (2010). Hen1 is required for oocyte development and piRNA stability in zebrafish. EMBO J, 29, 3688-3700

Ketting RF (2010). microRNA Biogenesis and Function; An Overview. In: Regulation of microRNAs, (Ed. Grosshans H), 700, 1-14

van Wolfswinkel JC and Ketting RF (2010). The role of small non-coding RNAs in genome stability and chromatin organization. J Cell Sci, 123, 1825-1839

Claycomb JM, Batista PJ, Pang KM, Gu W, Vasale JJ, van Wolfswinkel JC, Chaves DA, Shirayama M, Mitani S, Ketting RF, Conte D, Jr and Mello CC (2009). The Argonaute CSR-1 and Its 22G-RNA Cofactors Are Required for Holocentric Chromosome Segregation. Cell, 139, 123-134

den Broeder MJ, van der Linde H, Brouwer JR, Oostra BA, Willemsen R and Ketting RF (2009). Generation and Characterization of Fmr1 Knockout Zebrafish. PLoS ONE, 4, e7910

Ketting RF (2009). Semiconserved Regulation of Mesendoderm Differentiation by microRNAs. Dev Cell, 16, 487-488

Steiner FA, Okihara KL, Hoogstrate SW, Sijen T and Ketting RF (2009). RDE-1 slicer activity is required only for passenger-strand cleavage during RNAi in Caenorhabditis elegans. Nat Struct Mol Biol, 16, 207-211

van Wolfswinkel JC, Claycomb JM, Batista PJ, Mello CC, Berezikov E and Ketting RF (2009). CDE-1 Affects Chromosome Segregation through Uridylation of CSR-1-Bound siRNAs. Cell, 139, 135-148

Das PP, Bagijn MP, Goldstein LD, Woolford JR, Lehrbach NJ, Sapetschnig A, Buhecha HR, Gilchrist MJ, Howe KL, Stark R, Matthewss N, Berezilkov E, Ketting RF, Tavare S and Miska EA (2008). Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline. Mol Cell, 31, 79-90

Houwing S, Berezikov E and Ketting RF (2008). Zili is required for germ cell differentiation and meiosis in zebrafish. EMBO J, 27, 2702-2711

Houwing S, Kamminga LM, Berezikov E, Cronembold D, Girard A, van den Elst H, Filippov DV, Blaser H, Raz E, Moens CB, Plasterk RHA, Hannon GJ, Draper BW and Ketting RF (2007). A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in zebrafish. Cell, 129, 69-82

Ketting RF (2007). A dead end for microRNAs. Cell, 131, 1226-1227

Kloosterman WP, Lagendijk AK, Ketting RF, Moulton JD and Plasterk RHA (2007). Targeted inhibition of miRNA maturation with morpholinos reveals a role for miR-375 in pancreatic islet development. PLoS Biol, 5, e203

Steiner FA, Hoogstrate SW, Okihara KL, Thijssen KL, Ketting RF, Plasterk RHA and Sijen T (2007). Structural features of small RNA precursors determine Argonaute loading in Caenorhabditis elegans. Nat Struct Mol Biol, 14, 927-933