Boyd PS, Struve N, Bach M, Eberle JP, Gote M, Schock F, Cremer C, Kriegs M and Hausmann M (2016). Clustered localization of EGFRvIII in glioblastoma cells as detected by high precision localization microscopy. Nanoscale, 8, 20037-20047

Cremer C and Birk U (2016). Perspectives in super-resolved fluorescence microscopy: What comes next? Front Phys, 4, 1-11 

Lopez Perez R, Best G, Nicolay NH, Greubel C, Rossberger S, Reindl J, Dollinger G, Weber KJ, Cremer C and Huber PE (2016). Superresolution light microscopy shows nanostructure of carbon ion radiation-induced DNA double-strand break repair foci. FASEB J, 30, 2767-2776

Moser F, Hildenbrand G, Müller P, Al Saroori A, Biswas A, Bach M, Wenz F, Cremer C, Burger N, Veldwijk MR and Hausmann M (2016). Cellular uptake of gold nanoparticles and their behavior as labels for localization microscopy. Biophys J, 110, 947-953

Neumann J, Scherhag A, Otten S, Shen F, Leifke AL, Birk U, Greb C, Lucas K and Cremer C (2016). Chronic inflammation under the microscope. Micros Today, 24, 38-45

Pierzyńska-Mach A, Szczurek A, Cella Zanacchi F, Pennacchietti F, Drukała J, Diaspro A, Cremer C, Darzynkiewicz Z and Dobrucki JW (2016). Subnuclear localization, rates and effectiveness of UVC-induced unscheduled DNA synthesis visualized by fluorescence widefield, confocal and super-resolution microscopy. Cell Cycle, 15, 1156-1167

Szczurek A, Xing J, Birk UJ and Cremer C (2016). Single molecule localization microscopy of mammalian cell nuclei on the nanoscale. Front Genet, 7, 114

Żurek-Biesiada D, Szczurek AT, Prakash K, Best G, Mohana GK, Lee HK, Roignant JY, Dobrucki JW, Cremer C and Birk U (2016). Quantitative super-resolution localization microscopy of DNA in situ using Vybrant® DyeCycle™ Violet fluorescent probe. Data in Brief, 7, 157-171

Żurek-Biesiada D, Szczurek AT, Prakash K, Mohana GK, Lee HK, Roignant JY, Birk UJ, Dobrucki JW and Cremer C (2016). Localization microscopy of DNA in situ using Vybrant(®) DyeCycle™ Violet fluorescent probe: A new approach to study nuclear nanostructure at single molecule resolution. Exp Cell Res, 343, 97-106

Cremer T, Cremer M, Hubner B, Strickfaden H, Smeets D, Popken J, Sterr M, Markaki Y, Rippe K and Cremer C (2015). The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments. FEBS Lett, 589, 2931-43

Grab AL, Hagmann M, Dahint R and Cremer C (2015). Localization microscopy (SPDM) facilitates high precision control of lithographically produced nanostructures. Micron, 68, 1-7

Kirmes I, Szczurek A, Prakash K, Charapits I, Heiser C, Musheev M, Schock F, Fornalczyk K, Ma D, Birk U, Cremer C and Reid G (2015). A transient ischemic environment induces reversible compaction of chromatin. Genome Biol, 16, 246

Prakash K, Fournier D, Redl S, Best G, Borsos M, Tiwari VK, Ketting R, Tachibana-Konwalski K, Cremer C and Birk U (2015). Super-resolution imaging reveals structurally distinct periodic patterns of chromatin along pachytene chromosomes. Proc Natl Acad Sci U S A, 112, 14635-14640

Stuhlmuller M, Schwarz-Finsterle J, Fey E, Lux J, Bach M, Cremer C, Hinderhofer K, Hausmann M and Hildenbrand G (2015). In situ optical sequencing and structure analysis of a trinucleotide repeat genome region by localization microscopy after specific COMBOFISH nano-probing. Nanoscale, 7, 17938-17946

Cremer C (2014). Far‐field Light Microscopy, Encyclopedia of Life Sciences (eLS), Wiley-Blackwell. DOI:10.1002/9780470015902.a0005922.pub2

Cremer C (2014). Vorstoß in atomare Dimensionen. Laborjournal, 7-8, 65–67

Cremer T, Cremer C and Lichter P (2014). Recollections of a scientific journey published in Human Genetics: from chromosome territories to interphase cytogenetics and comparative genome hybridization. Human Genetics, 133, 403–416

Cremer C, Kaufmann R, Gunkel M, Polanski F, Müller P, Dierkes R, Degenhard S, Wege C, Hausmann M and Birk U (2014). Application Perspectives of Localization Microscopy in Virology. Histochem Cell Biol, 142, 43-59

Müller P, Lemmermann NA, Kaufmann R, Gunkel M, Paech D, Hildenbrand G, Holtappels R, Cremer C and Hausmann M (2014). Spatial distribution and structural arrangement of a murine cytomegalovirus glycoprotein detected by SPDM localization microscopy. Histochem Cell Biol, 142, 61-7

Szczurek AT, Prakash K, Lee HK, Żurek-Biesiada DJ, Best G, Hagmann M, Dobrucki JW, Cremer C, Birk U (2014). Single molecule localization microscopy of the distribution of chromatin using Hoechst and DAPI fluorescent probes. Nucleus, 5, 1-10

Wang Q, Dierkes R, Kaufmann R, Cremer C (2014). Quantitative analysis of individual Hepatocyte Growth Factor Receptor Clusters in Influenza A virus infected human epithelial cells using localization microscopy, Biochimica et Biophysica Acta, 1838, 1191–1198

Best G, Amberger R, Cremer C (2013). Super-Resolution Microscopy: Interference and Pattern Techniques. In Fluorescence Microscopy: From Principles to Biological Applications (Ed. Kubitscheck U), pp. 345 – 374. Wiley-Blackwell

Cremer C and Masters BR (2013). Resolution enhancement techniques in microscopy. Eur Phys J H, 38, 281-344

Rossberger S, Ach T, Best G, Cremer C, Heintzmann R, Dithmar S (2013). High resolution imaging of autofluorescent particles within drusen using structured illumination microscopy. Br J Ophthalmol, 97, 518-523

Rossberger S, Best G, Baddeley D, Heintzmann R, Birk U, Dithmar S, Cremer C (2013). Combination of structured illumination and single molecule localization microscopy in one setup. J Opt, 15, 094003

Ach T, Best G, Rossberger S, Heintzmann R, Cremer C and Dithmar S (2012). Autofluorescence imaging of human RPE cell granules using structured illumination microscopy. Br J Ophthalmol, 96, 1141-1144

Cremer C (2012). Optics far Beyond the Diffraction Limit: From Focused Nanoscopy to Spectrally Assigned Localization Microscopy. Springer Handbook of Lasers and Optics (Ed. Träger F), 1351–1389. Springer Inc

Cremer C (2012). Vom Farbenkreis zum Supermikroskop. In: Bayerische Akademie der schönen Künste. Jahrbuch. Wallstein Verlag, München, 25, 74-94

Cremer T, Markaki Y, Hübner B, Zunhammer A, Strickfaden H, Beichmanis S, He M, Schermelleh L, Cremer M and Cremer C (2012). Chromosome Territory Organization within the Nucleus. In Encyclopedia of Molecular Cell Biology and Molecular Medicine: Epigenetic Regulation and Epigenomics, 2nd edition (Ed. Meyers RA), Wiley-VCH, 451-484

Huber O, Brunner A, Maier P, Kaufmann R, Couraud P-O, Cremer C and Fricker G (2012). Localization Microscopy (SPDM) Reveals Clustered Formations of P-Glycoprotein in a Human Blood-Brain Barrier Model. PLoS ONE, 7, e44776

Kaufmann R, Cremer C and Gall JG (2012). Superresolution imaging of transcription units on newt lampbrush chromosomes. Chromosome Res, 20, 1009-1015

Kaufmann R, Piontek J, Grüll F, Kirchgessner M, Rossa J, Wolburg H, Blasig IE and Cremer C (2012). Visualization and quantitative analysis of reconstituted tight junctions using localization microscopy. PLoS ONE, 7, e31128

Maruyama EO, Hori T, Tanabe H, Kitamura H, Matsuda R, Tone S, Hozak P, Habermann FA, von Hase J, Cremer C, Fukagawa T and Harata M (2012). The actin family member Arp6 and the histone variant H2A.Z are required for spatial positioning of chromatin in chicken cell nuclei. J Cell Sci, 125, 3739-3743

Müller P, Weiland Y, Kaufmann R, Gunkel M, Hillebrandt S, Cremer C and Hausmann M (2012). Analysis of fluorescent nanostructures in biological systems by means of spectral position determination microscopy (SPDM). Curr Microsc Contrib Adv Sci Technol, 1, 3-12

Baddeley D, Crossman D, Rossberger S, Cheyne JE, Montgomery JD, Jayasinghe ID, Cremer C, Cannell MB and Soeller C (2011). 4D Super-Resolution Microscopy with Conventional Fluorophores and Single Wavelength Excitation in Optically Thick Cells and Tissues. PLoS ONE, 6, e20645

Best G, Amberger R, Baddeley D, Ach T, Dithmar S, Heintzmann R and Cremer C (2011). Structured illumination microscopy of autofluorescent aggregations in human tissue. Micron, 42, 330-335

Brunner A, Best G, Lemmer P, Amberger R, Ach T, Dithmar S, Heintzmann R and Cremer C (2011). Fluorescence Microscopy with Structured Excitation Illumination. In: Handbook of Biomedical Optics (Ed. Boas DA, Pitris C, Ramanujam N), Taylor & Francis, 543-560

Cremer C (2011). Lichtmikroskopie unterhalb des Abbe-Limits. Lokalisationsmikroskopie. Phys in unserer Zeit, 42, 21-29

Cremer C (2011). Mikroskope und Mikroben. In: Viren und andere Mikroben: Heil oder Plage? Studium Generale der Universität Heidelberg. Universitätsverlag Winter, Heidelberg

Cremer C, Kaufmann R, Gunkel M, Pres S, Weiland Y, Müller P, Ruckelshausen T, Lemmer P, Geiger F, Degenhard S, Wege C, Lemmermann NAW, Holtappels R, Strickfaden H, Hausmann M (2011). Superresolution imaging of biological nanostructures by spectral precision distance microscopy. Biotechnology, 6, 1037–1051

Hübschmann D, Kepper N, Cremer C and Kreth G (2011). Quantitative approaches to nuclear architecture analysis and modelling. In: Advances in Nuclear Architecture. Springer, Berlin-Heidelberg-New York, 87-129

Kaufmann R, Müller P, Hildenbrand G, Hausmann M and Cremer C (2011). Analysis of Her2/neu membrane protein clusters in different types of breast cancer cells using localization microscopy. J Microsc, 242, 46-54

Kaufmann R, Müller P, Hausmann M and Cremer C (2011). Imaging label-free intracellular structures by localisation microscopy. Micron, 42, 348-352

Markaki Y, Gunkel M, Schermelleh L, Beichmanis S, Neumann J, Heidemann M, Leonhardt H, Eick D, Cremer C and Cremer T (2011). Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment. Cold Spring Harbor Symp Quant Biol, 75, 475-492

Remmele S, Oehm B, Staier F, Eipel H, Cremer C and Hesser J (2011). Reconstruction of high-resolution fluorescence microscopy images based on axial tomography. In: SPIE Medical Imaging. International Society for Optics and Photonics, 79624O

Rieckher M, Birk UJ, Meyer H, Ripoll J and Tavernarakis N (2011). Microscopic optical projection tomography in vivo. PLoS One, 6, e18963

Staier F, Eipel H, Matula P, Evsikov AV, Kozubek M, Cremer C and Hausmann M (2011). Micro axial tomography: A miniaturized, versatile stage device to overcome resolution anisotropy in fluorescence light microscopy. Rev Sci Instrum, 82, 093701

Weiland Y, Lemmer P and Cremer C (2011). Combining FISH with Localisation Microscopy, Superresolution Imaging of Nuclear Genome Nanostructures. Chromosome Res, 19, 5-23

Ach T, Best G, Ruppenstein M, Amberger R, Cremer C and Dithmar S (2010). Hochauflösende Fluoreszenzmikroskopie des Retinalen Pigmentepithels mittels strukturierter Beleuchtung. Der Ophtalmologe, 11, 1037-1042

Cremer C (2010). Licht aus dem Dunkeln, Physik Journal, 9, 18-19

Cremer C, von Ketteler A, Lemmer P, Kaufmann R, Weiland Y, Mueller P, Hausmann M, Baddeley D and Amberger A (2010). Far field fluorescence microscopy of cellular structures at molecular resolution. In: Nanoscopy and Multidimensional Optical Fluorescence Microscopy, (Ed. Diaspro A), Taylor & Francis, 1-35

Grossmann C, Schwarz-Finsterle J, Schmitt E, Birk U, Hildenbrand G, Cremer C, Trakhtenbrot L and Hausmann M (2010). Variations of the spatial fluorescence distribution in ABL gene chromatin domains measured in blood cell nuclei by SMI microscopy after COMBO – FISH labelling. In: Microscopy: Science, Technology, Applications and Education (Ed. Mendez-Vilas A, Diaz J), Formatex Research Center 688-695

Heride C, Ricoul M, Kieu K, von Hase J, Guillemot V, Cremer C, Dubrana K and Sabatier L (2010). Distance between homologous chromosomes results from chromosome positioning constraints. J Cell Sci, 123, 4063-4075

Hübschmann D, Kepper N, Cremer C and Kreth G (2010). Quantitative Approaches to Nuclear Architecture Analysis and Modelling. In: Advances in Nuclear Architecture (Ed. Adams NM, Freemont PS), Springer Inc, 87-129

Lang M, Jegou T, Chung I, Richter K, Munch S, Udvarhelyi A, Cremer C, Hemmerich P, Engelhardt J, Hell SW and Rippe K (2010). Three-dimensional organization of promyelocytic leukemia nuclear bodies. J Cell Sci, 123, 392-400

Müller P, Schmitt E, Jacob A, Hoheisel J, Kaufmann R, Cremer C and Hausmann M (2010). COMBO-FISH Enables High Precision Localization Microscopy as a Prerequisite for Nanostructure Analysis of Genome Loci. Int J Mol Sci, 11, 4094-4105

Rouquette J, Cremer C, Cremer T and Fakan S (2010). Functional Nuclear Architecture Studied by Microscopy: Present and Future. Int Rev Cell Mol Biol, 282, 1-90

Baddeley D, Chagin VO, Schermelleh L, Martin S, Pombo A, Carlton PM, Gahl A, Domaing P, Birk U, Leonhardt H, Cremer C and Cardoso MC (2010). Measurement of replication structures at the nanometer scale using super-resolution light microscopy. Nucleic Acids Res, 38, e8

Baddeley D, Weiland Y, Batram C, Birk U and Cremer C (2010). Model based precision structural measurements on barely resolved objects. J Microsc, 237, 70-78

Bohn M, Diesinger P, Kaufmann R, Weiland Y, Muller P, Gunkel M, von Ketteler A, Lemmer P, Hausmann M, Heermann DW and Cremer C (2010). Localization Microscopy Reveals Expression-Dependent Parameters of Chromatin Nanostructure. Biophys J, 99, 1358-1367

Gröner N, Capoulade J, Cremer C and Wachsmuth M (2010). Measuring and imaging diffusion with multiple scan speed image correlation spectroscopy. Opt Express, 18, 21225- 21237

Tykocinski LO, Sinemus A, Rezavandy E, Weiland Y, Baddeley D, Cremer C, Sonntag S, Willecke K, Derbinski J and Kyewski B (2010). Epigenetic regulation of promiscuous gene expression in thymic medullary epithelial cells. Proc Natl Acad Sci U S A, 107, 19426-19431

Baddeley D, Jayasinghe ID, Cremer C, Cannell MB and Soeller C (2009). Light-induced Dark States of Organic Fluochromes Enable 30 nm Resolution Imaging in Standard Media. Biophys J, 96, L22-L24

Cremer C (2009). Lichtoptische Nanoskopie, BIOspektrum, 15, 2-5

Gunkel M, Erdel F, Rippe K, Lemmer P, Kaufmann R, Hoermann C, Amberger R and Cremer C (2009). Dual color localization microscopy of cellular nanostructures. Biotechnol J, 4, 927-938

Kaufmann R, Lemmer P, Gunkel  M, Weiland  Y, Müller  P, Hausmann  M, Baddeley  D, Amberger  R and Cremer  C (2009). SPDM – Single Molecule Superresolution of Cellular Nanostructures. Proc SPIE, 7185, 71850J-19

Lemmer P, Gunkel M, Weiland Y, Muller P, Baddeley D, Kaufmann R, Urich A, Eipel H, Amberger R, Hausmann M and Cremer C (2009). Using conventional fluorescent markers for far-field fluorescence localization nanoscopy allows resolution in the 10-nm range. J Microsc, 235, 163-171

Batram C, Baddeley D, Kreth G and Cremer C (2008). High precision size measurement of centromere 8 and the 8q24/c-myc gene region in metaphase and interphase human fibroblasts indicate differential condensation. J Struct Biol, 164, 293-303

Birk UJ, Baddeley D and Cremer C (2008). Nanosizing by spatially modulated illumination (SMI) microscopy and applications to the nucleus. In: The Nucleus, Vol. 2: Chromatin, Transcription, Envelope, Proteins, Dynamics, and Imaging (Ed. Hancock R), Humana Press

Cremer C (2008). Vorstoß in den Nanokosmos: Neue Mikroskope überschreiten für bislang unüberwindlich gehaltene Grenzen. Ruperto Carola (Forschungsmagazin Universität Heidelberg), 3/2008, 4-12

Friedland W, Paretzke HG, Ballarini F, Ottolenghi A, Kreth G and Cremer C (2008). First steps towards systems radiation biology studies concerned with DNA and chromosome structure within living cells. Radiat Environ Biophys, 47, 49-61

Lemmer P, Gunkel M, Baddeley D, Kaufmann R, Urich A, Weiland Y, Reymann J, Muller P, Hausmann M and Cremer C (2008). SPDM: light microscopy with single-molecule resolution at the nanoscale. Appl Phys B, 93, 1-12

Rauch J, Knoch TA, Solovei I, Teller K, Stein S, Buiting K, Horsthemke B, Langowski J, Cremer T, Hausmann M and Cremer C (2008). Light optical precision measurements of the active and inactive Prader-Willi syndrome imprinted regions in human cell nuclei. Differentiation, 76, 66-82

Reymann J, Baddeley D, Gunkel M, Lemmer P, Stadter W, Jegou T, Rippe K, Cremer C and Birk U (2008). High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy. Chromosome Res, 16, 367-382

Ronneberger O, Baddeley D, Scheipl F, Verveer PJ, Burkhardt H, Cremer C, Fahrmeir L, Cremer T and Joffe B (2008). Spatial quantitative analysis of fluorescently labeled nuclear structures: Problems, methods, pitfalls. Chromosome Res, 16, 523–562

Baddeley D, Batram C, Weiland Y, Cremer C and Birk UJ (2007). Nanostructure analysis using spatially modulated illumination microscopy. Nature Protocols, 2, 2640-2646

Birk UJ, Toomre D, Wagner C, Cremer C (2007). Size Estimation of Protein Clusters in the Nanometer Range by Using Spatially Modulated Illumination Microscopy. In: Modern Research and Educational Topics in Microscopy (Ed. Méndez-Vilas A and Díaz J), Formatex Microscopy Series, 1, 272-279

Caddle LB, Grant JL, Szatkiewicz J, van Hase J, Shirley BJ, Bewersdorf J, Cremer C, Arneodo A, Khalil A and Mills KD (2007). Chromosome neighborhood composition determines translocation outcomes after exposure to high-dose radiation in primary cells. Chromosome Res, 15, 1061-1073

Fenz S MH, Kreth G, Baddeley D, Weiland  Y, Schwarz-Finsterle J, Cremer C, Birk UJ (2007). Two-color intranuclear distance measurements of gene regions in human lymphocytes. Proc of SPIE, 6630, 2-10

Kreth G  and Cremer C (2007). Chromatin Structure and the Formation of Chromosomal Alterations. In: Chromosomal Alterations: Methods, Results and Importance in Human Health (Ed. G Obe and Vijayalaxmi), Springer Verlag

Kreth G, Pazhanisamy SK, Hausmann M and Cremer C (2007). Cell type-specific quantitative predictions of radiation-induced chromosome aberrations: A computer model approach. Radiation Res, 167, 515-525

Mathee H, Baddeley D, Wotzlaw C, Cremer C and Birk U (2007). Spatially modulated illumination microscopy using one objective lens. Optical Engineering, 46

Schwarz-Finsterle J, Stein S, Grossmann C, Schmitt E, Trakhtenbrot L, Rechavi G, Amariglio N, Cremer C and Hausmann M (2007). Comparison of triple helical COMBO-FISH and standard FISH by means of quantitative microscopic image analysis of abl/bcr positions in cell nuclei. J Biochem Biophys Methods, 70, 397-406