Diamanti MA, Gupta J, Bennecke M, De Oliveira T, Ramakrishnan M, Braczynski AK, Richter B, Beli P, Hu Y, Saleh M, Mittelbronn M, Dikic I and Greten FR (2017). IKKα controls ATG16L1 degradation to prevent ER stress during inflammation. J Exp Med, 214, 423-437

Heidelberger JB, Wagner SA and Beli P (2016). Mass spectrometry based proteomics for investigating DNA damage-associated protein ubiquitylation. Front Genet, 7, 109

Richter B, Sliter DA, Herhaus L, Stolz A, Wang C, Beli P, Zaffagnini G, Wild P, Martens S, Wagner SA, Youle RJ and Dikic I (2016). Phosphorylation of OPTN by TBK1 enhances its binding to Ub chains and promotes selective autophagy of damaged mitochondria. Proc Natl Acad Sci U S A, 113, 4039-4044

Wagner SA, Oehler H, Voigt A, Dalic D, Freiwald A, Serve H and Beli P (2016). ATR inhibition rewires cellular signaling networks induced by replication stress. Proteomics, 16, 402-416

Wagner SA, Satpathy S, Beli P and Choudhary C (2016). SPATA2 links CYLD to the TNF-α receptor signaling complex and modulates the receptor signaling outcomes. EMBO J, 35, 1868-1884

Tollenaere MA, Villumsen BH, Blasius M, Nielsen JC, Wagner SA, Bartek J, Beli P, Mailand N and Bekker-Jensen S (2015). p38- and MK2-dependent signalling promotes stress-induced centriolar satellite remodelling via 14-3-3-dependent sequestration of CEP131/AZI1. Nat Commun, 6, 10075

Yang J, Wagner SA and Beli P (2015). Illuminating spatial and temporal organization of protein interaction networks by mass spectrometry-based proteomics. Front Genet, 6, 344

Beli P and Jackson SP (2015). Ubiquitin regulates dissociation of DNA repair factors from chromatin.Oncotarget, 6, 14727-8

Brown JS, Lukashchuk N, Sczaniecka-Clift M, Britton S, le Sage C, Calsou P, Beli P#, Galanty Y#, Jackson SP# (2015). Neddylation Promotes Ubiquitylation and Release of Ku from DNA-Damage Sites. Cell Rep, 11, 704-14 (#indicates joint correspondence)

Bursomanno S*, Beli P*, Khan AM, Minocherhomji S, Wagner SA, Bekker-Jensen S, Mailand N, Choudhary C, Hickson ID and Liu Y (2015). Proteome-wide analysis of SUMO2 targets in response to pathological DNA replication stress in human cells. DNA Repair (Amst), 25, 84-96 (*indicates joint contribution)

Chu WK, Payne MJ, Beli P, Hanada K, Choudhary C, Hickson ID (2015). FBH1 influences DNA replication fork stability and homologous recombination through ubiquitylation of RAD51. Nat Commun, 6, 5931

Gallina I, Colding C, Henriksen P, Beli P, Nakamura K, Offman J, Mathiasen DP, Silva S, Hoffmann E, Groth A, Choudhary C, Lisby M (2015). Cmr1/WDR76 defines a nuclear genotoxic stress body linking genome integrity and protein quality control. Nat Commun, 6, 6533

Satpathy S, Wagner SA, Beli P, Gupta R, Kristiansen TA, Malinova D, Francavilla C, Tolar P, Bishop GA, Hostager BS and Choudhary C (2015). Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation. Mol Syst Biol, 11, 810

Schmidt CK, Galanty Y, Sczaniecka-Clift M, Coates J, Jhujh S, Demir M, Cornwell M, Beli P and Jackson SP (2015). Systematic E2 screening reveals a UBE2D-RNF138-CtIP axis promoting DNA repair. Nat Cell Biol, 17, 1458-70

Schölz C, Weinert BT, Wagner SA, Beli P, Miyake Y, Qi J, Jensen LJ, Streicher W, McCarthy AR, Westwood NJ, Lain S, Cox J, Matthias P, Mann M, Bradner JE, Choudhary C (2015). Acetylation site specificities of lysine deacetylase inhibitors in human cells. Nat Biotechnol, 33, 415-23

Oka Y, Varmark H, Vitting‐Seerup K, Beli P, Waage J, Hakobyan A, Mistrik M, Choudhary C, Rohde M, Bekker‐Jensen S, Mailand N (2014). UBL5 is essential for pre‐mRNA splicing and sister chromatid cohesion in human cells. EMBO Rep, 15, 956-964

Villumsen BH, Danielsen JR, Povlsen L, Sylvestersen KB, Merdes A, Beli P, Yang YG, Choudhary C, Nielsen ML, Mailand N, Bekker-Jensen S (2013). A new cellular stress response that triggers centriolar satellite reorganization and ciliogenesis. EMBO J, 32, 3029-40

Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T and Choudhary C (2013). Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli. Mol Cell, 51, 265-272

Beli P*, Lukashchuk N*, Wagner SA, Weinert BT, Olsen JV, Baskcomb L, Mann M, Jackson SP and Choudhary C (2012). Proteomic investigations reveal a role of THRAP3 in DNA damage response. Mol Cell, 46, 212-225 (*indicates joint contribution)

Mosbech A, Gibbs-Seymour I, Kagias K, Thorslund T, Beli P, Povlsen L, Nielsen SV, Smedegaard S, Sedgwick G, Lukas C, Hartmann-Petersen R, Lukas J, Choudhary C, Pocock R, Bekker-Jensen S and Mailand N (2012). DVC1 (C1orf124) is a DNA damage-targeting p97 adaptor that promotes ubiquitin-dependent responses to replication blocks. Nat Struct Mol Biol, 19, 1084-1092

Povlsen LK*, Beli P*, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N and Choudhary C (2012). Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. Nat Cell Biol, 14, 1089-1098 (*indicates joint contribution)

Wagner SA*, Beli P*, Weinert BT, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch CH and Choudhary C (2012). Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues. Mol Cell Proteomics, 11, 1578-1585 (*indicates joint contribution)

Wagner SA*, Beli P*, Weinert BT, Nielsen ML, Cox J, Mann M and Choudhary C (2011). A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. Mol Cell Proteomics, 10, M111.013284 (*indicates joint contribution)

Beli P, Mascheroni D, Xu D and Innocenti M (2008). WAVE and Arp2/3 jointly inhibit filopodium formation by entering into a complex with mDia2. Nat Cell Biol, 10, 849-857